imspy.simulation.timsim package¶
Subpackages¶
- imspy.simulation.timsim.jobs package
- Submodules
- imspy.simulation.timsim.jobs.add_noise_from_real_data module
- imspy.simulation.timsim.jobs.assemble_frames module
- imspy.simulation.timsim.jobs.build_acquisition module
- imspy.simulation.timsim.jobs.digest_fasta module
- imspy.simulation.timsim.jobs.simulate_charge_states module
- imspy.simulation.timsim.jobs.simulate_fragment_intensities module
- imspy.simulation.timsim.jobs.simulate_frame_distributions module
- imspy.simulation.timsim.jobs.simulate_frame_distributions_emg module
- imspy.simulation.timsim.jobs.simulate_ion_mobilities module
- imspy.simulation.timsim.jobs.simulate_occurrences module
- imspy.simulation.timsim.jobs.simulate_precursor_spectra module
- imspy.simulation.timsim.jobs.simulate_retention_time module
- imspy.simulation.timsim.jobs.simulate_scan_distributions module
- imspy.simulation.timsim.jobs.utility module
- Module contents
Submodules¶
imspy.simulation.timsim.simulator module¶
- imspy.simulation.timsim.simulator.build_arg_parser()¶
Builds and returns the command line argument parser.
- Return type:
ArgumentParser
- imspy.simulation.timsim.simulator.check_required_args(args, parser)¶
Ensures required arguments are not None; raises errors otherwise.
- imspy.simulation.timsim.simulator.configure_gpu_memory(memory_limit_gb=4)¶
Restricts TensorFlow GPU memory usage to the specified limit per GPU.
- imspy.simulation.timsim.simulator.get_default_settings()¶
Returns a dictionary of default values to merge with user args and potential config files.
- Return type:
dict
- imspy.simulation.timsim.simulator.load_toml_config(config_path)¶
Loads a TOML configuration file into a dictionary.
- Return type:
dict
- imspy.simulation.timsim.simulator.main()¶
Entry point for the proteomics simulation script.