pub fn build_pseudo_spectra_with_xic(
ds: &TimsDatasetDIA,
ms1: &[ClusterResult1D],
ms2: &[ClusterResult1D],
features: &[SimpleFeature],
cand_opts: &CandidateOpts,
xic_opts: &XicScoreOpts,
pseudo_opts: &PseudoSpecOpts,
) -> (Vec<PseudoSpectrum>, Vec<(usize, usize, f32)>)Expand description
High-level entrypoint:
- enumerate geometric/tile-based candidates
- refine by XIC score (best precursor per fragment + cutoff)
- build pseudo-spectra from the surviving pairs