mscore::chemistry

Module utility

Source

Functionsยง

  • find_unimod_patterns
    Convert a peptide sequence with UNIMOD annotations to a tuple of plain sequence and for each position in the sequence, the mass of the modification at that position (0 if no modification), which is the representation of sequence nad modifications used by SAGE
  • reshape_prosit_array
    Reshape the flat prosit array into a 3D array of shape (29, 2, 3)
  • unimod_sequence_to_tokens
    Convert a peptide sequence with UNIMOD annotations to a list of tokens