Functionsยง
- find_
unimod_ patterns - Convert a peptide sequence with UNIMOD annotations to a tuple of plain sequence and for each position in the sequence, the mass of the modification at that position (0 if no modification), which is the representation of sequence nad modifications used by SAGE
- reshape_
prosit_ array - Reshape the flat prosit array into a 3D array of shape (29, 2, 3)
- unimod_
sequence_ to_ tokens - Convert a peptide sequence with UNIMOD annotations to a list of tokens