pub struct TimsSpectrum {
pub frame_id: i32,
pub scan: i32,
pub retention_time: f64,
pub mobility: f64,
pub ms_type: MsType,
pub spectrum: IndexedMzSpectrum,
}Fields§
§frame_id: i32§scan: i32§retention_time: f64§mobility: f64§ms_type: MsType§spectrum: IndexedMzSpectrumImplementations§
Source§impl TimsSpectrum
impl TimsSpectrum
Sourcepub fn new(
frame_id: i32,
scan_id: i32,
retention_time: f64,
mobility: f64,
ms_type: MsType,
spectrum: IndexedMzSpectrum,
) -> Self
pub fn new( frame_id: i32, scan_id: i32, retention_time: f64, mobility: f64, ms_type: MsType, spectrum: IndexedMzSpectrum, ) -> Self
Creates a new TimsSpectrum instance.
§Arguments
frame_id- index of frame in TDF raw file.scan_id- index of scan in TDF raw file.retention_time- The retention time in seconds.mobility- The inverse ion mobility.spectrum- ATOFMzSpectruminstance.
§Examples
use mscore::data::spectrum::{IndexedMzSpectrum, MsType};
use mscore::timstof::spectrum::{TimsSpectrum};
let spectrum = TimsSpectrum::new(1, 1, 100.0, 0.1, MsType::FragmentDda, IndexedMzSpectrum::new(vec![1000, 2000], vec![100.5, 200.5], vec![50.0, 60.0]));pub fn filter_ranged( &self, mz_min: f64, mz_max: f64, intensity_min: f64, intensity_max: f64, ) -> Self
pub fn to_resolution(&self, resolution: i32) -> TimsSpectrum
pub fn vectorized(&self, resolution: i32) -> TimsSpectrumVectorized
pub fn to_windows( &self, window_length: f64, overlapping: bool, min_peaks: usize, min_intensity: f64, ) -> BTreeMap<i32, TimsSpectrum>
Trait Implementations§
Source§impl Add for TimsSpectrum
impl Add for TimsSpectrum
Source§type Output = TimsSpectrum
type Output = TimsSpectrum
The resulting type after applying the
+ operator.Source§fn add(self, other: Self) -> TimsSpectrum
fn add(self, other: Self) -> TimsSpectrum
Performs the
+ operation. Read moreSource§impl Clone for TimsSpectrum
impl Clone for TimsSpectrum
Source§fn clone(&self) -> TimsSpectrum
fn clone(&self) -> TimsSpectrum
Returns a copy of the value. Read more
1.0.0 · Source§fn clone_from(&mut self, source: &Self)
fn clone_from(&mut self, source: &Self)
Performs copy-assignment from
source. Read moreSource§impl Debug for TimsSpectrum
impl Debug for TimsSpectrum
Auto Trait Implementations§
impl Freeze for TimsSpectrum
impl RefUnwindSafe for TimsSpectrum
impl Send for TimsSpectrum
impl Sync for TimsSpectrum
impl Unpin for TimsSpectrum
impl UnwindSafe for TimsSpectrum
Blanket Implementations§
Source§impl<T> BorrowMut<T> for Twhere
T: ?Sized,
impl<T> BorrowMut<T> for Twhere
T: ?Sized,
Source§fn borrow_mut(&mut self) -> &mut T
fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more
Source§impl<T> CloneToUninit for Twhere
T: Clone,
impl<T> CloneToUninit for Twhere
T: Clone,
Source§impl<T> IntoEither for T
impl<T> IntoEither for T
Source§fn into_either(self, into_left: bool) -> Either<Self, Self>
fn into_either(self, into_left: bool) -> Either<Self, Self>
Converts
self into a Left variant of Either<Self, Self>
if into_left is true.
Converts self into a Right variant of Either<Self, Self>
otherwise. Read moreSource§fn into_either_with<F>(self, into_left: F) -> Either<Self, Self>
fn into_either_with<F>(self, into_left: F) -> Either<Self, Self>
Converts
self into a Left variant of Either<Self, Self>
if into_left(&self) returns true.
Converts self into a Right variant of Either<Self, Self>
otherwise. Read more§impl<T> Pointable for T
impl<T> Pointable for T
§impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
§fn to_subset(&self) -> Option<SS>
fn to_subset(&self) -> Option<SS>
The inverse inclusion map: attempts to construct
self from the equivalent element of its
superset. Read more§fn is_in_subset(&self) -> bool
fn is_in_subset(&self) -> bool
Checks if
self is actually part of its subset T (and can be converted to it).§fn to_subset_unchecked(&self) -> SS
fn to_subset_unchecked(&self) -> SS
Use with care! Same as
self.to_subset but without any property checks. Always succeeds.§fn from_subset(element: &SS) -> SP
fn from_subset(element: &SS) -> SP
The inclusion map: converts
self to the equivalent element of its superset.