Struct TimsDatasetDDA

pub struct TimsDatasetDDA {
    pub loader: TimsDataLoader,
}

Fields

loader: TimsDataLoader

Implementations

impl TimsDatasetDDA

pub fn new( bruker_lib_path: &str, data_path: &str, in_memory: bool, use_bruker_sdk: bool, ) -> Self

pub fn get_selected_precursors(&self) -> Vec<DDAPrecursor>

pub fn get_precursor_frames( &self, min_intensity: f64, max_num_peaks: usize, num_threads: usize, ) -> Vec<TimsFrame>

pub fn get_pasef_frame_ms_ms_info(&self) -> Vec<PasefMsMsMeta>

pub fn get_pasef_fragments(&self, num_threads: usize) -> Vec<PASEFDDAFragment>

Get the fragment spectra for all PASEF selected precursors

Trait Implementations

impl IndexConverter for TimsDatasetDDA

fn tof_to_mz(&self, frame_id: u32, tof_values: &Vec<u32>) -> Vec<f64>

fn mz_to_tof(&self, frame_id: u32, mz_values: &Vec<f64>) -> Vec<u32>

fn scan_to_inverse_mobility( &self, frame_id: u32, scan_values: &Vec<u32>, ) -> Vec<f64>

fn inverse_mobility_to_scan( &self, frame_id: u32, inverse_mobility_values: &Vec<f64>, ) -> Vec<u32>

impl TimsData for TimsDatasetDDA

fn get_frame(&self, frame_id: u32) -> TimsFrame

fn get_raw_frame(&self, frame_id: u32) -> RawTimsFrame

fn get_slice(&self, frame_ids: Vec<u32>, num_threads: usize) -> TimsSlice

fn get_acquisition_mode(&self) -> AcquisitionMode

fn get_frame_count(&self) -> i32

fn get_data_path(&self) -> &str