Struct TimsSlice

pub struct TimsSlice {
    pub frames: Vec<TimsFrame>,
}

Fields

frames: Vec<TimsFrame>

Implementations

impl TimsSlice

pub fn new(frames: Vec<TimsFrame>) -> Self

Create a new TimsSlice from a vector of TimsFrames

Arguments

• frames - A vector of TimsFrames

Returns

• TimsSlice - A TimsSlice containing the TimsFrames

Example

use mscore::timstof::slice::TimsSlice;

let slice = TimsSlice::new(vec![]);

pub fn filter_ranged( &self, mz_min: f64, mz_max: f64, scan_min: i32, scan_max: i32, inv_mob_min: f64, inv_mob_max: f64, intensity_min: f64, intensity_max: f64, num_threads: usize, ) -> TimsSlice

Filter the TimsSlice by m/z, scan, and intensity

Arguments

• mz_min - The minimum m/z value
• mz_max - The maximum m/z value
• scan_min - The minimum scan value
• scan_max - The maximum scan value
• intensity_min - The minimum intensity value
• intensity_max - The maximum intensity value
• num_threads - The number of threads to use

Returns

• TimsSlice - A TimsSlice containing only the TimsFrames that pass the filter

Example

use mscore::timstof::slice::TimsSlice;

let slice = TimsSlice::new(vec![]);
let filtered_slice = slice.filter_ranged(400.0, 2000.0, 0, 1000, 0.0, 100000.0, 0.0, 1.6, 4);

pub fn filter_ranged_ms_type_specific( &self, mz_min_ms1: f64, mz_max_ms1: f64, scan_min_ms1: i32, scan_max_ms1: i32, inv_mob_min_ms1: f64, inv_mob_max_ms1: f64, intensity_min_ms1: f64, intensity_max_ms1: f64, mz_min_ms2: f64, mz_max_ms2: f64, scan_min_ms2: i32, scan_max_ms2: i32, inv_mob_min_ms2: f64, inv_mob_max_ms2: f64, intensity_min_ms2: f64, intensity_max_ms2: f64, num_threads: usize, ) -> TimsSlice

pub fn get_slice_by_type(&self, t: MsType) -> TimsSlice

Get a vector of TimsFrames by MsType

Arguments

• t - The MsType to filter by

Returns

• TimsSlice - A TimsSlice containing only the TimsFrames of the specified MsType

pub fn to_resolution(&self, resolution: i32, num_threads: usize) -> TimsSlice

pub fn vectorized( &self, resolution: i32, num_threads: usize, ) -> TimsSliceVectorized

pub fn from_flat_slice( frame_ids: Vec<i32>, scans: Vec<i32>, tofs: Vec<i32>, retention_times: Vec<f64>, mobilities: Vec<f64>, mzs: Vec<f64>, intensities: Vec<f64>, ) -> Self

pub fn flatten(&self) -> TimsSliceFlat

pub fn to_windows( &self, window_length: f64, overlapping: bool, min_peaks: usize, min_intensity: f64, num_threads: usize, ) -> Vec<TimsSpectrum>

pub fn to_dense_windows( &self, window_length: f64, overlapping: bool, min_peaks: usize, min_intensity: f64, resolution: i32, num_threads: usize, ) -> Vec<(Vec<f64>, Vec<f64>, Vec<f64>, Vec<i32>, Vec<i32>, usize, usize)>

pub fn to_tims_planes( &self, tof_max_value: i32, num_chunks: i32, num_threads: usize, ) -> Vec<TimsPlane>

Trait Implementations

impl Clone for TimsSlice

fn clone(&self) -> TimsSlice

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.