List of all items
Structs
- cluster::candidates::AssignmentResult
- cluster::candidates::CandidateOpts
- cluster::candidates::FragmentGroupIndex
- cluster::candidates::FragmentIndex
- cluster::candidates::FragmentMetadata
- cluster::candidates::FragmentMetadataEntry
- cluster::candidates::FragmentQueryOpts
- cluster::candidates::FragmentStorage
- cluster::candidates::PairFeatures
- cluster::candidates::PseudoBuildResult
- cluster::candidates::ScoreOpts
- cluster::candidates::ThinPrecursor
- cluster::cluster::Attach1DOptions
- cluster::cluster::AxisFits
- cluster::cluster::BuildSpecOpts
- cluster::cluster::ClusterMergeDistancePolicy
- cluster::cluster::ClusterMergePolicy
- cluster::cluster::ClusterProvenance
- cluster::cluster::ClusterRawData
- cluster::cluster::ClusterResult1D
- cluster::cluster::ClusterSpec1D
- cluster::cluster::Eval1DOpts
- cluster::cluster::IntensityMetrics
- cluster::cluster::RawAttachContext
- cluster::cluster::RawPoints
- cluster::cluster::ScanSlice
- cluster::cluster::Windows1D
- cluster::feature::AveragineLut
- cluster::feature::FeatureBuildParams
- cluster::feature::GroupingParams
- cluster::feature::SimpleFeature
- cluster::feature::SimpleFeatureParams
- cluster::io::ClusterFile
- cluster::io::ClusterRow
- cluster::io::PseudoSpectraFile
- cluster::peak::FrameBinView
- cluster::peak::ImDetectParams
- cluster::peak::ImPeak1D
- cluster::peak::RtExpandParams
- cluster::peak::RtFrames
- cluster::peak::RtLocalPeak
- cluster::peak::RtPeak1D
- cluster::peak::RtPeaksForIm
- cluster::peak::RtTraceCtx
- cluster::peak::TofRtGrid
- cluster::peak::TofScanGrid
- cluster::peak::TofScanWindowGrid
- cluster::pseudo::PseudoFragment
- cluster::pseudo::PseudoSpecOpts
- cluster::pseudo::PseudoSpectrum
- cluster::scoring::PrecursorSearchIndex
- cluster::scoring::RtBuckets
- cluster::scoring::ScoredHit
- cluster::scoring::XicDetails
- cluster::scoring::XicScoreOpts
- cluster::utility::Fit1D
- cluster::utility::StitchParams
- cluster::utility::TofScale
- data::dataset::TimsDataset
- data::dda::PASEFDDAFragment
- data::dda::PrecursorCoord
- data::dda::PrecursorMS1Signal
- data::dda::SignalMoments
- data::dda::TimsDatasetDDA
- data::dia::ClusterExtractionOpts
- data::dia::DiaIndex
- data::dia::Ms2GroupProgram
- data::dia::ProgramSlice
- data::dia::PseudoSpectrumBuildOpts
- data::dia::TimsDatasetDIA
- data::handle::BrukerLibTimsDataConverter
- data::handle::CalibratedIndexConverter
- data::handle::LookupIndexConverter
- data::handle::SimpleIndexConverter
- data::handle::TimsInMemoryLoader
- data::handle::TimsLazyLoder
- data::handle::TimsRawDataLayout
- data::meta::DDAFragmentInfo
- data::meta::DDAPrecursor
- data::meta::DDAPrecursorMeta
- data::meta::DIAFragmentFrameInfo
- data::meta::DIAWindowGroupInfo
- data::meta::DiaMsMisInfo
- data::meta::DiaMsMsWindow
- data::meta::FrameMeta
- data::meta::GlobalMetaData
- data::meta::MzCalibration
- data::meta::PasefMsMsMeta
- data::raw::BrukerTimsDataLibrary
- sim::containers::FragmentIonSim
- sim::containers::FrameToWindowGroupSim
- sim::containers::FramesSim
- sim::containers::IonSim
- sim::containers::IsotopeTransmissionConfig
- sim::containers::PeptidesSim
- sim::containers::ScansSim
- sim::containers::SignalDistribution
- sim::containers::WindowGroupSettingsSim
- sim::dda::TimsTofSyntheticsFrameBuilderDDA
- sim::dia::TimsTofSyntheticsFrameBuilderDIA
- sim::handle::FragmentIonTransmissionData
- sim::handle::FragmentIonsWithComplementary
- sim::handle::TimsTofSyntheticsDataHandle
- sim::lazy_builder::TimsTofLazyFrameBuilderDDA
- sim::lazy_builder::TimsTofLazyFrameBuilderDIA
- sim::precursor::TimsTofSyntheticsPrecursorFrameBuilder
Enums
- cluster::candidates::AssignmentMode
- cluster::peak::ThresholdMode
- cluster::pseudo::PrecursorKey
- cluster::scoring::MatchScoreMode
- cluster::scoring::PrecursorLike
- data::acquisition::AcquisitionMode
- data::handle::TimsDataLoader
- data::handle::TimsIndexConverter
- sim::containers::IsotopeTransmissionMode
Traits
Functions
- cluster::candidates::best_ms1_for_each_ms2_any
- cluster::candidates::best_ms1_for_each_ms2_geom
- cluster::candidates::best_ms1_for_each_ms2_xic
- cluster::candidates::build_pseudo_spectra_all_pairs
- cluster::candidates::build_pseudo_spectra_end_to_end
- cluster::candidates::build_pseudo_spectra_end_to_end_xic
- cluster::candidates::fragment_from_cluster
- cluster::cluster::attach_raw_points_for_spec_1d_in_ctx
- cluster::cluster::bin_range_for_win
- cluster::cluster::build_im_marginal
- cluster::cluster::build_rt_marginal
- cluster::cluster::build_scan_slices
- cluster::cluster::build_tof_hist
- cluster::cluster::clusters_can_merge
- cluster::cluster::decorate_with_mz_for_cluster
- cluster::cluster::evaluate_spec_1d
- cluster::cluster::extract_raw_points_for_clusters_in_ctx
- cluster::cluster::make_spec_from_pair
- cluster::cluster::make_specs_from_im_and_rt_groups_threads
- cluster::cluster::merge_cluster_group
- cluster::cluster::merge_clusters
- cluster::cluster::merge_clusters_by_distance
- cluster::feature::build_simple_features_from_clusters
- cluster::io::load_bincode
- cluster::io::load_json
- cluster::io::load_parquet
- cluster::io::load_pseudo_bincode
- cluster::io::save_bincode
- cluster::io::save_json
- cluster::io::save_parquet
- cluster::io::save_pseudo_bincode
- cluster::io::strip_heavy
- cluster::peak::build_frame_bin_view
- cluster::peak::build_tof_rt_grid_full
- cluster::peak::detect_im_peaks_from_tof_scan_grid
- cluster::peak::detect_im_peaks_from_tof_scan_window
- cluster::peak::expand_im_peak_along_rt
- cluster::peak::expand_many_im_peaks_along_rt
- cluster::peak::expand_many_im_peaks_along_rt_flat
- cluster::peak::find_rt_peaks
- cluster::peak::rt_trace_for_im_peak
- cluster::peak::rt_trace_for_im_peak_by_bounds
- cluster::pseudo::build_pseudo_spectra_from_pairs
- cluster::pseudo::build_pseudo_spectra_with_xic
- cluster::pseudo::cluster_mz_mu
- cluster::scoring::assign_ms2_to_best_ms1_by_xic
- cluster::scoring::best_ms1_for_each_ms2
- cluster::scoring::enumerate_ms2_ms1_pairs_simple
- cluster::scoring::geom_match_score_precursor
- cluster::scoring::geom_match_score_single_cluster
- cluster::scoring::jaccard_time
- cluster::scoring::ms1_to_ms2_map
- cluster::scoring::query_precursor_scored
- cluster::scoring::query_precursors_scored_par
- cluster::scoring::score_pairs
- cluster::scoring::xic_match_score
- cluster::scoring::xic_match_score_precomputed
- cluster::scoring::xic_match_score_precursor
- cluster::utility::blur_tof_all_frames
- cluster::utility::build_im_marginal
- cluster::utility::build_rt_marginal
- cluster::utility::build_tof_hist
- cluster::utility::fallback_rt_peak_from_trace
- cluster::utility::find_im_peaks_row
- cluster::utility::fit1d_moment
- cluster::utility::gaussian_blur_tof_sparse
- cluster::utility::im_peak_id
- cluster::utility::lerp
- cluster::utility::quad_subsample
- cluster::utility::quantile
- cluster::utility::quantile_mut
- cluster::utility::robust_noise_mad
- cluster::utility::robust_noise_neighbor_diff
- cluster::utility::rt_peak_id
- cluster::utility::smooth_vector_gaussian
- cluster::utility::stitch_im_peaks_flat_unordered_impl
- cluster::utility::trapezoid_area_fractional
- data::dia::attach_raw_points_for_spec_1d_threads
- data::meta::read_dda_precursor_meta
- data::meta::read_dia_ms_ms_info
- data::meta::read_dia_ms_ms_windows
- data::meta::read_global_meta_sql
- data::meta::read_meta_data_sql
- data::meta::read_mz_calibration
- data::meta::read_pasef_frame_ms_ms_info
- data::utility::compress_collection
- data::utility::flatten_scan_values
- data::utility::get_data_for_compression
- data::utility::get_data_for_compression_par
- data::utility::get_peak_cnts
- data::utility::get_realdata
- data::utility::get_realdata_loop
- data::utility::merge_ranges
- data::utility::modify_tofs
- data::utility::parse_decompressed_bruker_binary_data
- data::utility::reconstruct_compressed_data
- data::utility::zstd_compress
- data::utility::zstd_decompress
- sim::utility::reshape_prosit_array
- sim::utility::sequence_to_all_ions
- sim::utility::sequence_to_all_ions_par